Publications

Functional connectomics spanning multiple areas of mouse visual cortex

The MICrONS Consortium

Nature. 2025 doi:10.1038/s41586-025-08790-w | Website

CAVE: Connectome Annotation Versioning Engine

Dorkenwald S, Schneider-Mizell CM, Brittain D, Halageri A, Jordan C, Kemnitz N, Castro MA, Silversmith W, Maitin-Shephard J, Troidl J, Pfister H, Gillet V, Xenes D, Bae JA, Bodor AL, Buchanan J, Bumbarger DJ, Elabbady L, Jia Z, Kapner D, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu S, Reid RC, da Costa NM, Seung HS, Collman F

Nature Methods. 2025 doi:10.1038/s41592-024-02426-z | Website

Neuronal wiring diagram of an adult brain

Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu S, McKellar CE, Lin A, Costa M, Eichler K, Yin Y, Silversmith W, Schneider-Mizell C, Jordan CS, Brittain D, Halageri A, Kuehner K, Ogedengbe O, Morey R, Gager J, Kruk K, Perlman E, Yang R, Deutsch D, Bland D, Sorek M, Lu R, Macrina T, Lee K, Bae JA, Mu S, Nehoran B, Mitchell E, Popovych S, Wu J, Jia Z, Castro MA, Kemnitz N, Ih D, Bates AS, Eckstein N, Funke J, Collman F, Bock DD, Jefferis GSXE, Seung HS, Murthy M, The FlyWire Consortium

Nature. 2024 doi:10.1038/s41586-024-07558-y | Website

Multi-layered maps of neuropil with segmentation-guided contrastive learning

Dorkenwald S, Li PH, Januszewski M, Berger DR, Maitin-Shepard J, Bodor AL, Collman F, Schneider-Mizell CM, da Costa NM, Lichtman JW, Jain V

Nature Methods. 2023 doi:10.1038/s41592-023-02059-8 | Website

FlyWire: online community for whole-brain connectomics

Dorkenwald S, McKellar CE, Macrina T, Kemnitz N, Lee K, Lu R, Wu J, Popovych S, Mitchell E, Nehoran B, Jia Z, Bae JA, Mu S, Ih D, Castro M, Ogedengbe O, Halageri A, Kuehner K, Sterling AR, Ashwood Z, Zung J, Brittain D, Collman F, Schneider-Mizell C, Jordan C, Silversmith W, Baker C, Deutsch D, Encarnacion-Rivera L, Kumar S, Burke A, Bland D, Gager J, Hebditch J, Koolman S, Moore M, Morejohn S, Silverman B, Willie K, Willie R, Yu S, Murthy M, Seung HS

Nature Methods. 2022 doi:10.1038/s41592-021-01330-0 | Website

Binary and analog variation of synapses between cortical pyramidal neurons

Dorkenwald S, Turner NL, Macrina T, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Kemnitz N, Silversmith WM, Ih D, Zung J, Zlateski A, Tartavull I, Yu S, Popovych S, Wong W, Castro M, Jordan CS, Wilson AM, Froudarakis E, Buchanan J, Takeno MM, Torres R, Mahalingam G, Collman F, Schneider-Mizell CM, Bumbarger DJ, Li Y, Becker L, Suckow S, Reimer J, Tolias AS, Macarico da Costa N, Reid RC, Seung HS

eLife. 2022 doi:10.7554/elife.76120 | Website

Automated synaptic connectivity inference for volume electron microscopy

Dorkenwald S, Schubert PJ, Killinger MF, Urban G, Mikula S, Svara F, Kornfeld J

Nature Methods. 2017 doi:10.1038/nmeth.4206 | Website

Selected Publications